BSD Portsbiology/tRNAscan-SE 2.0.11 DragonFly
Searching for tRNA genes in genomic sequence
- System
- DragonFly
- Repository
- DPorts
- Maintainer
- [email protected] (as in FreeBSD)
- License
- GPLv3+
- Categories
- biology
- Package size
- 2447.7 KiB, 18641.5 KiB installed
Description
tRNAscan-SE was written in the PERL (version 5.0) script language. Input consists of DNA or RNA sequences in FASTA format. tRNA predictions are output in standard tabular or ACeDB format. tRNAscan-SE does no tRNA detection itself, but instead combines the strengths of three independent tRNA prediction programs by negotiating the flow of information between them, performing a limited amount of post-processing, and outputting the results in one of several formats.
In the other systems
The newest version among them is 2.0.11, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| DragonFly | biology/tRNAscan-SE | 2.0.11 newest | none known | - | [email protected] | - |
| FreeBSD | biology/tRNAscan-SE | 2.0.11 newest | none known | - | [email protected] | - |
| GhostBSD | biology/tRNAscan-SE | 2.0.11 newest | no data | - | [email protected] | - |
Install
Binary package:
pkg install tRNAscan-SEFrom DPorts:
cd /usr/dports/biology/tRNAscan-SE && make install cleanDependency graph
Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.
Dependencies
Run dependencies 2
No port depends on this one.