BSD Portsbiology/jellyfish 2.3.0_4 DragonFly
Fast, memory-efficient counting of k-mers in DNA
- System
- DragonFly
- Repository
- DPorts
- Maintainer
- [email protected] (as in FreeBSD)
- License
- BSD3CLAUSE, GPLv3+
- Categories
- biology
- Package size
- 296.4 KiB, 1205.8 KiB installed
Description
Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers quickly by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
In the other systems
The newest version among them is 2.3.1, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| DragonFly | biology/jellyfish | 2.3.0_4 behind since 2026-09-04 | none known | - | [email protected] | - |
| FreeBSD | biology/jellyfish | 2.3.1 newest | none known | - | [email protected] | 2026-10-08 |
| HardenedBSD | biology/jellyfish | 2.3.1 newest | no data | - | [email protected] | - |
| GhostBSD | biology/jellyfish | 2.3.1 newest | no data | - | [email protected] | - |
Install
Binary package:
pkg install JellyfishFrom DPorts:
cd /usr/dports/biology/jellyfish && make install cleanDependency graph
Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.
Dependencies
Run dependencies 2
No port depends on this one.