biology/p5-Bio-DB-NCBIHelper 1.7.8 DragonFly

Collection of routines useful for queries to NCBI databases

System: DragonFly
Repository: DPorts
Maintainer: [email protected] (as in FreeBSD)
License: ART10, GPLv1+
Categories: biology, perl5
Package size: 58.8 KiB, 147.4 KiB installed

Description

Bio::DB::NCBIHelper provides a single place to setup some common methods for querying NCBI web databases. This module just centralizes the methods for constructing a URL for querying NCBI GenBank and NCBI GenPept and the common HTML stripping done in postprocess_data().

In the other systems

The newest version among them is 1.7.8, as upstream numbers it.

System

Port

Version

Vulnerabilities

Status

Maintainer

Last update

DragonFly

biology/p5-Bio-DB-NCBIHelper

1.7.8 newest

none known

[email protected]

FreeBSD

biology/p5-Bio-DB-NCBIHelper

1.7.8 newest

none known

[email protected]

OpenBSD

biology/p5-Bio-DB-NCBIHelper

1.7.8 newest

no data

The OpenBSD ports mailing-list <[email protected]>

HardenedBSD

biology/p5-Bio-DB-NCBIHelper

1.7.8 newest

no data

[email protected]

GhostBSD

biology/p5-Bio-DB-NCBIHelper

1.7.8 newest

no data

[email protected]

Compare across BSDs

Install

Binary package:

pkg install p5-Bio-DB-NCBIHelper

From DPorts:

cd /usr/dports/biology/p5-Bio-DB-NCBIHelper && make install clean

Dependency graph

Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.

graph LR
  me["biology/p5-Bio-DB-NCBIHelper"]
  me --> d0["biology/p5-Bio-ASN1-EntrezGene"]
  me --> d1["biology/p5-BioPerl"]
  me --> d2["devel/p5-Cache-Cache"]
  me --> d3["lang/perl5.36"]
  me --> d4["net/p5-URI"]
  me --> d5["textproc/p5-XML-Twig"]
  me --> d6["www/p5-CGI"]
  me --> d7["www/p5-HTTP-Message"]
  me -.-> dmore(["2 more"])
  classDef this fill:#ab2b28,color:#ffffff,stroke:#ab2b28
  class me this

Dependencies

Run dependencies 10

No port depends on this one.