BSD Ports

biology/p5-Bio-DB-NCBIHelper 1.7.8 FreeBSD

Collection of routines useful for queries to NCBI databases

System
FreeBSD
Repository
FreeBSD ports
Maintainer
[email protected]
License
ART10, GPLv1+
Categories
biology, perl5
Package size
58.9 KiB, 145.4 KiB installed

Description

Bio::DB::NCBIHelper provides a single place to setup some common methods for querying NCBI web databases. This module just centralizes the methods for constructing a URL for querying NCBI GenBank and NCBI GenPept and the common HTML stripping done in postprocess_data().

In the other systems

The newest version among them is 1.7.8, as upstream numbers it.

SystemPortVersionVulnerabilitiesStatusMaintainerLast update
FreeBSDbiology/p5-Bio-DB-NCBIHelper1.7.8 newestnone known-[email protected]-
OpenBSDbiology/p5-Bio-DB-NCBIHelper1.7.8 newestno data-The OpenBSD ports mailing-list <[email protected]>-
DragonFlybiology/p5-Bio-DB-NCBIHelper1.7.8 newestnone known-[email protected]-
HardenedBSDbiology/p5-Bio-DB-NCBIHelper1.7.8 newestno data-[email protected]-
GhostBSDbiology/p5-Bio-DB-NCBIHelper1.7.8 newestno data-[email protected]-

Compare across BSDs

Install

Binary package:

pkg install p5-Bio-DB-NCBIHelper

From the ports tree:

cd /usr/ports/biology/p5-Bio-DB-NCBIHelper/ && make install clean

To depend on this port in another port's Makefile:

RUN_DEPENDS=	p5-Bio-DB-NCBIHelper>0:biology/p5-Bio-DB-NCBIHelper

Packages

The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.

Repositoryaarch64amd64armv6armv7i386
FreeBSD:14:latest1.7.81.7.81.7.71.7.81.7.8
FreeBSD:14:quarterly1.7.81.7.8n/a1.7.81.7.8
FreeBSD:15:latest1.7.81.7.8n/a1.7.81.7.8
FreeBSD:15:quarterly1.7.81.7.8n/an/an/a
FreeBSD:16:latest1.7.81.7.8n/an/an/a
FreeBSD:16:quarterlyn/an/an/an/an/a

Dependency graph

Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.

Dependencies

As this port's Makefile names them.

Build 9

Runtime 9

Test 3

The full lists below include those, and their dependencies in turn.

Build dependencies 86
Run dependencies 86

No port depends on this one.

Configuration

No options to configure.

USES
perl5
Service scripts
none

Files

pkg-plist 18
  • bin/bp_biofetch_genbank_proxy
  • bin/bp_download_query_genbank
  • bin/bp_query_entrez_taxa
  • %%SITE_PERL%%/Bio/DB/EntrezGene.pm
  • %%SITE_PERL%%/Bio/DB/GenBank.pm
  • %%SITE_PERL%%/Bio/DB/GenPept.pm
  • %%SITE_PERL%%/Bio/DB/NCBIHelper.pm
  • %%SITE_PERL%%/Bio/DB/Query/GenBank.pm
  • %%SITE_PERL%%/Bio/DB/Taxonomy/entrez.pm
  • %%PERL5_MAN1%%/bp_biofetch_genbank_proxy.1.gz
  • %%PERL5_MAN1%%/bp_download_query_genbank.1.gz
  • %%PERL5_MAN1%%/bp_query_entrez_taxa.1.gz
  • %%PERL5_MAN3%%/Bio::DB::EntrezGene.3.gz
  • %%PERL5_MAN3%%/Bio::DB::GenBank.3.gz
  • %%PERL5_MAN3%%/Bio::DB::GenPept.3.gz
  • %%PERL5_MAN3%%/Bio::DB::NCBIHelper.3.gz
  • %%PERL5_MAN3%%/Bio::DB::Query::GenBank.3.gz
  • %%PERL5_MAN3%%/Bio::DB::Taxonomy::entrez.3.gz
distinfo 1
FileSizeSHA256
Bio-DB-NCBIHelper-1.7.8.tar.gz45770f8e2a739c872608a24003a642a686b6e9c72af59a3bc0aceea6e5a5c2ea5ecbf
Master sites 1
  • CPAN

Commit history 0

No commits in the history this site was built from.