biology/p5-Bio-ASN1-EntrezGene 1.73_2,1 FreeBSD

Regular expression-based Perl Parser for NCBI Entrez Gene

System: FreeBSD
Repository: FreeBSD ports
Maintainer: [email protected]
License: ART10, GPLv1+
Categories: biology, perl5
Package size: 42.6 KiB, 148.5 KiB installed

Description

Bio::ASN1::EntrezGene is a regular expression-based Perl Parser for NCBI Entrez Gene genome databases [1]. It parses an ASN.1-formatted Entrez Gene record and returns a data structure that contains all data items from the gene record.

[1] http://www.ncbi.nih.gov/entrez/query.fcgi?db=gene

The parser will report error & line number if input data does not conform to the NCBI Entrez Gene genome annotation file format.

In the other systems

The newest version among them is 1.73, as upstream numbers it.

System

Port

Version

Vulnerabilities

Status

Maintainer

Last update

FreeBSD

biology/p5-Bio-ASN1-EntrezGene

1.73_2,1 newest

none known

[email protected]

OpenBSD

biology/p5-Bio-ASN1-EntrezGene

1.73v0 newest

no data

The OpenBSD ports mailing-list <[email protected]>

NetBSD

biology/p5-Bio-ASN1-EntrezGene

1.73nb6 newest

none known

[email protected]

2026-07-16

DragonFly

biology/p5-Bio-ASN1-EntrezGene

1.73_2,1 newest

none known

[email protected]

HardenedBSD

biology/p5-Bio-ASN1-EntrezGene

1.73_2,1 newest

no data

[email protected]

GhostBSD

biology/p5-Bio-ASN1-EntrezGene

1.73_2,1 newest

no data

[email protected]

Compare across BSDs

Install

Binary package:

pkg install p5-Bio-ASN1-EntrezGene

From the ports tree:

cd /usr/ports/biology/p5-Bio-ASN1-EntrezGene/ && make install clean

To depend on this port in another port's Makefile:

RUN_DEPENDS=	p5-Bio-ASN1-EntrezGene>0:biology/p5-Bio-ASN1-EntrezGene

Packages

The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.

Repository

aarch64

amd64

armv6

armv7

i386

FreeBSD:14:latest

1.73_2,1

FreeBSD:14:quarterly

1.73_2,1

n/a

1.73_2,1

FreeBSD:15:latest

1.73_2,1

n/a

1.73_2,1

FreeBSD:15:quarterly

1.73_2,1

n/a

FreeBSD:16:latest

1.73_2,1

n/a

FreeBSD:16:quarterly

n/a

Dependency graph

Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.

graph LR
  me["biology/p5-Bio-ASN1-EntrezGene"]
  u0["biology/p5-Bio-DB-NCBIHelper"] --> me
  me --> d0["biology/p5-Bio-Cluster"]
  me --> d1["biology/p5-Bio-Variation"]
  me --> d2["biology/p5-BioPerl"]
  me --> d3["converters/libiconv"]
  me --> d4["converters/p5-Encode-Locale"]
  me --> d5["converters/p5-MIME-Base32"]
  me --> d6["converters/p5-MIME-Base64"]
  me --> d7["converters/p5-Text-Iconv"]
  me -.-> dmore(["70 more"])
  classDef this fill:#ab2b28,color:#ffffff,stroke:#ab2b28
  class me this

Dependencies

As this port's Makefile names them.

Build 2

p5-Bio-Cluster>=0 : biology/p5-Bio-Cluster
p5-BioPerl>=0 : biology/p5-BioPerl

Runtime 2

p5-Bio-Cluster>=0 : biology/p5-Bio-Cluster
p5-BioPerl>=0 : biology/p5-BioPerl

The full lists below include those, and their dependencies in turn.

Build dependencies 78

Run dependencies 78

Required by 1

biology/p5-Bio-DB-NCBIHelper

Configuration

No options to configure.

USES: perl5
Service scripts: none

Files

pkg-plist 10

%%SITE_PERL%%/Bio/ASN1/EntrezGene.pm
%%SITE_PERL%%/Bio/ASN1/EntrezGene/Indexer.pm
%%SITE_PERL%%/Bio/ASN1/Sequence.pm
%%SITE_PERL%%/Bio/ASN1/Sequence/Indexer.pm
%%SITE_PERL%%/Bio/SeqIO/entrezgene.pm
%%PERL5_MAN3%%/Bio::ASN1::EntrezGene.3.gz
%%PERL5_MAN3%%/Bio::ASN1::EntrezGene::Indexer.3.gz
%%PERL5_MAN3%%/Bio::ASN1::Sequence.3.gz
%%PERL5_MAN3%%/Bio::ASN1::Sequence::Indexer.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::entrezgene.3.gz

distinfo 1

File

Size

SHA256

Bio-ASN1-EntrezGene-1.73.tar.gz

157307

f9e778db705ce5c35ad2798e38a8490b644edfdc14253aa1b74a1f5e79fc6a4b

Master sites 1

CPAN

Commit history 0

No commits in the history this site was built from.