BSD Portsbiology/py-crossmap 0.7.3_1 DragonFly
Lift over genomics coordinates between assemblies
- System
- DragonFly
- Repository
- DPorts
- Maintainer
- [email protected] (as in FreeBSD)
- License
- GPLv3+
- Categories
- biology, python
- Package size
- 71.4 KiB, 522.5 KiB installed
Description
CrossMap is a program for genome coordinates conversion between different assemblies (such as hg18 (NCBI36) <=> hg19 (GRCh37)). It supports commonly used file formats including BAM, CRAM, SAM, Wiggle, BigWig, BED, GFF, GTF, MAF VCF, and gVCF.
In the other systems
| System | Port | Version |
|---|---|---|
| DragonFly | biology/py-crossmap | 0.7.3_1 |
| FreeBSD | biology/py-crossmap | 0.7.4 |
| HardenedBSD | biology/py-crossmap | 0.7.4 |
| GhostBSD | biology/py-crossmap | 0.7.4 |
Install
Binary package:
pkg install py311-crossmapFrom DPorts:
cd /usr/dports/biology/py-crossmap && make install cleanDependencies
Run dependencies 4
No port depends on this one.