BSD Portsbiology/py-pysam 0.23.0_1 DragonFly
Python module for reading, manipulating and writing genomic data sets
- System
- DragonFly
- Repository
- DPorts
- Maintainer
- [email protected] (as in FreeBSD)
- License
- MIT
- Categories
- biology, python
- Package size
- 3117.0 KiB, 29081.5 KiB installed
Description
pysam is a lightweight wrapper of the htslib C-API and provides facilities to read and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files as well as access to the command line functionality of the samtools and bcftools packages. The module supports compression and random access through indexing.
This module provides a low-level wrapper around the htslib C-API as using cython and a high-level API for convenient access to the data within standard genomic file formats.
In the other systems
The newest version among them is 0.24.1, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| DragonFly | biology/py-pysam | 0.23.0_1 behind since 2026-09-10 | none known | - | [email protected] | - |
| FreeBSD | biology/py-pysam | 0.24.1 newest | none known | - | [email protected] | 2026-09-10 |
| HardenedBSD | biology/py-pysam | 0.24.1 newest | no data | - | [email protected] | - |
| GhostBSD | biology/py-pysam | 0.24.1 newest | no data | - | [email protected] | - |
Install
Binary package:
pkg install py311-pysamFrom DPorts:
cd /usr/dports/biology/py-pysam && make install cleanDependency graph
Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.