biology/py-htseq 2.0.9_1 DragonFly

Python library to facilitate programmatic analysis of sequence data

System: DragonFly
Repository: DPorts
Maintainer: [email protected] (as in FreeBSD)
License: GPLv3
Categories: biology, python
Package size: 335.2 KiB, 1481.5 KiB installed

Description

HTSeq is a Python library to facilitate programmatic analysis of data from high-throughput sequencing (HTS) experiments. A popular component of HTSeq is htseq-count, a script to quantify gene expression in bulk and single-cell RNA-Seq and similar experiments.

In the other systems

The newest version among them is 2.1.2, as upstream numbers it.

System

Port

Version

Vulnerabilities

Status

Maintainer

Last update

DragonFly

biology/py-htseq

2.0.9_1

none known

[email protected]

FreeBSD

biology/py-htseq

2.1.2_2 newest

none known

[email protected]

HardenedBSD

biology/py-htseq

2.1.2_2 newest

no data

[email protected]

GhostBSD

biology/py-htseq

2.1.2_2 newest

no data

[email protected]

Install

Binary package:

pkg install py311-HTSeq

From DPorts:

cd /usr/dports/biology/py-htseq && make install clean

Dependency graph

Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.

graph LR
  me["biology/py-htseq"]
  me --> d0["biology/py-pysam"]
  me --> d1["lang/python311"]
  me --> d2["math/py-matplotlib"]
  me --> d3["math/py-numpy"]
  classDef this fill:#ab2b28,color:#ffffff,stroke:#ab2b28
  class me this

Dependencies

Run dependencies 4

No port depends on this one.