BSD Portsbiology/py-ont-fast5-api 4.0.2_1 DragonFly
Interface to HDF5 files in Oxford Nanopore .fast5 format
- System
- DragonFly
- Repository
- DPorts
- Maintainer
- [email protected] (as in FreeBSD)
- License
- MPL20
- Categories
- biology, python
- Package size
- 93.2 KiB, 584.4 KiB installed
Description
The ont_fast5_api is a simple interface to HDF5 files of the Oxford Nanopore .fast5 file format. It provides:
o Implementation of the fast5 file schema using h5py library
o Methods to interact with and reflect the fast5 file schema
o Tools to convert between multi\_read and single\_read formats
o Tools to compress/decompress raw data in files
In the other systems
The newest version among them is 4.1.3, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| DragonFly | biology/py-ont-fast5-api | 4.0.2_1 behind since 2026-09-07 | none known | - | [email protected] | - |
| FreeBSD | biology/py-ont-fast5-api | 4.1.3 newest | none known | - | [email protected] | 2026-10-08 |
| HardenedBSD | biology/py-ont-fast5-api | 4.1.3 newest | no data | - | [email protected] | - |
| GhostBSD | biology/py-ont-fast5-api | 4.1.3 newest | no data | - | [email protected] | - |
Install
Binary package:
pkg install py311-ont-fast5-apiFrom DPorts:
cd /usr/dports/biology/py-ont-fast5-api && make install cleanDependency graph
Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.
Dependencies
Run dependencies 6
No port depends on this one.