BSD Portsbiology/sra-tools 2.11.0_4 DragonFly
NCBI's toolkit for handling data in INSDC Sequence Read Archives
- System
- DragonFly
- Repository
- DPorts
- Maintainer
- [email protected] (as in FreeBSD)
- License
- LGPL21+, PD
- Categories
- biology
- Package size
- 12128.7 KiB, 210539.5 KiB installed
Description
SRA tools is a toolkit for using data in the INSDC Sequence Read Archives.
SRAs operated by International Nucleotide Sequence Database Collaboration houses sequence reads and alignments generated by "next-gen" sequencers. SRA tools allows conversion of .sra files, which INSDC SRAs maintain, from/to other formats that the 'next-gen' sequenecers generate including:
* csfasta/csqual (ABI SOLiD) * fastq (and fasta for writing) * hdf5 (PacBio, reading only) * qseq (older Illumina) * sam (writing only) / bam (reading only) * sff
The toolkit uses NCBI-VDB back-end enabling seamless access to remote SRA data and local SRA files.
In the other systems
The newest version among them is 3.4.1, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| DragonFly | biology/sra-tools | 2.11.0_4 | none known | - | [email protected] | - |
| FreeBSD | biology/sra-tools | 3.4.1_3 newest | none known | - | [email protected] | 2026-10-08 |
| NetBSD | biology/sra-tools | 3.2.0nb2 | none known | - | [email protected] | - |
| HardenedBSD | biology/sra-tools | 3.4.1_3 newest | no data | - | [email protected] | - |
| GhostBSD | biology/sra-tools | 3.4.1_3 newest | no data | - | [email protected] | - |
Install
Binary package:
pkg install sra-toolsFrom DPorts:
cd /usr/dports/biology/sra-tools && make install cleanDependency graph
Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.
Dependencies
Run dependencies 3
No port depends on this one.