BSD Portsbiology/sra-tools 3.2.0nb2 NetBSD
NCBI's toolkit for handling data in INSDC Sequence Read Archives
- System
- NetBSD
- Repository
- pkgsrc
- Maintainer
- [email protected]
- License
- public-domain AND gnu-lgpl-v2.1
- Categories
- biology
- Package size
- 12417.4 KiB, 182349.5 KiB installed
Description
The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC (International Nucleotide Sequence Database Collaboration) SRA (Sequence Read Archives). The SRA house sequence reads and alignments generated by DNA/RNA sequencers. The SRA Toolkit facilitates downloading sequence data, performing filtering and conversions on-the-fly, thus saving enormous amounts of time, bandwidth, and storage.
In the other systems
The newest version among them is 3.4.1, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| NetBSD | biology/sra-tools | 3.2.0nb2 | none known | - | [email protected] | - |
| FreeBSD | biology/sra-tools | 3.4.1_3 newest | none known | - | [email protected] | 2026-10-08 |
| DragonFly | biology/sra-tools | 2.11.0_4 | none known | - | [email protected] | - |
| HardenedBSD | biology/sra-tools | 3.4.1_3 newest | no data | - | [email protected] | - |
| GhostBSD | biology/sra-tools | 3.4.1_3 newest | no data | - | [email protected] | - |
Install
Binary package:
pkgin install sra-toolsFrom pkgsrc:
cd /usr/pkgsrc/biology/sra-tools && make install cleanPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | Version |
|---|---|
| NetBSD 10.1 x86_64 | 3.2.0nb2 |
| NetBSD 10.1 aarch64 | 3.2.0nb2 |
| SmartOS / illumos x86_64 | - |
| macOS 15 arm64 | - |
Dependency graph
Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.