BSD Portsbiology/atac-seq 1.5.0 NetBSD
Core tools needed for ATAC-Seq analysis
- System
- NetBSD
- Repository
- pkgsrc
- Maintainer
- [email protected]
- Categories
- biology, meta-pkgs
- Package size
- 1.6 KiB, 0.0 KiB installed
Description
The atac-seq meta-package provides the core tools needed for performing a typical ATAC-Seq differential accessibility analysis, including adapter trimming, quality control, alignment, peak calling, and identification of differentially accessible peaks. Researchers may want additional tools for data manipulation, gene ontology, etc.
In the other systems
The newest version among them is 1.5.0, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| NetBSD | biology/atac-seq | 1.5.0 newest | none known | - | [email protected] | - |
| FreeBSD | biology/atac-seq | 0.3.1 | none known | - | [email protected] | 2026-10-08 |
| HardenedBSD | biology/atac-seq | 0.3.1 | no data | - | [email protected] | - |
Install
Binary package:
pkgin install atac-seqFrom pkgsrc:
cd /usr/pkgsrc/biology/atac-seq && make install cleanPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | Version |
|---|---|
| NetBSD 10.1 x86_64 | 1.5.0 |
| NetBSD 10.1 aarch64 | - |
| SmartOS / illumos x86_64 | - |
| macOS 15 arm64 | - |
Dependency graph
Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.
Dependencies
Run dependencies 19
No port depends on this one.