BSD Portsbiology/bowtie2 2.5.4 NetBSD
Ultrafast, memory-efficient short read aligner
- System
- NetBSD
- Repository
- pkgsrc
- Maintainer
- [email protected]
- License
- gnu-gpl-v3
- Categories
- biology
- Package size
- 8776.4 KiB, 25341.4 KiB installed
Description
Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour.
In the other systems
The newest version among them is 2.5.5, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| NetBSD | biology/bowtie2 | 2.5.4 | none known | - | [email protected] | - |
| FreeBSD | biology/bowtie2 | 2.5.5 newest | none known | - | [email protected] | 2026-10-08 |
| DragonFly | biology/bowtie2 | 2.5.4 | none known | - | [email protected] | - |
| HardenedBSD | biology/bowtie2 | 2.5.5 newest | no data | - | [email protected] | - |
| GhostBSD | biology/bowtie2 | 2.5.5 newest | no data | - | [email protected] | - |
Install
Binary package:
pkgin install bowtie2From pkgsrc:
cd /usr/pkgsrc/biology/bowtie2 && make install cleanPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | Version |
|---|---|
| NetBSD 10.1 x86_64 | 2.5.4 |
| NetBSD 10.1 aarch64 | - |
| SmartOS / illumos x86_64 | - |
| macOS 15 arm64 | 2.5.4 |
Dependency graph
Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.