BSD Ports

wip/chip-seq 1.2 NetBSD

Core tools needed for ChIP-Seq analysis

System
NetBSD
Repository
pkgsrc-wip
Maintainer
[email protected]
Categories
wip, biology, meta-pkgs

Description

The chip-seq meta-package provides the core tools needed for performing a typical ChIP-Seq differential accessibility analysis, including adapter trimming, quality control, alignment, peak calling, and identification of differentially accessible peaks. Researchers may want additional tools for data manipulation, gene ontology, etc.

In the other systems

SystemPortVersion
NetBSDwip/chip-seq1.2
FreeBSDbiology/chip-seq0.3.1
HardenedBSDbiology/chip-seq0.3.1

Install

From pkgsrc-wip (no binary package):

cd /usr/pkgsrc/wip/chip-seq && make install clean

Dependencies

Run dependencies 17

No port depends on this one.