BSD PortsVulnerable: version 1.21 is affected by 2 known vulnerabilities. See below.
biology/samtools 1.21 NetBSD
Tools for manipulating sequence alignment maps
- System
- NetBSD
- Repository
- pkgsrc
- Maintainer
- [email protected]
- License
- mit
- Categories
- biology
- Package size
- 398.2 KiB, 1332.9 KiB installed
Description
Samtools implements various utilities for post-processing alignments in the SAM, BAM, and CRAM formats, including indexing, variant calling (in conjunction with bcftools), and a simple alignment viewer.
In the other systems
| System | Port | Version |
|---|---|---|
| NetBSD | biology/samtools | 1.21 |
| FreeBSD | biology/samtools | 1.24 |
| DragonFly | biology/samtools | 1.21 |
| HardenedBSD | biology/samtools | 1.24 |
| GhostBSD | biology/samtools | 1.24 |
Install
Binary package:
pkgin install samtoolsFrom pkgsrc:
cd /usr/pkgsrc/biology/samtools && make install cleanPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | Version |
|---|---|
| NetBSD 10.1 x86_64 | 1.21 |
| NetBSD 10.1 aarch64 | 1.21 |
| SmartOS / illumos x86_64 | 1.21 |
| macOS 15 arm64 | 1.21 |