BSD Portsbiology/bcftools 1.21 NetBSD
Tools for manipulating BCF and VCF variant call files
- System
- NetBSD
- Repository
- pkgsrc
- Maintainer
- [email protected]
- License
- mit
- Categories
- biology
- Package size
- 698.3 KiB, 2540.1 KiB installed
Description
BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed.
In the other systems
The newest version among them is 1.24, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| NetBSD | biology/bcftools | 1.21 behind since 2026-07-11 | none known | - | [email protected] | - |
| FreeBSD | biology/bcftools | 1.24 newest | none known | - | [email protected] | 2026-10-08 |
| DragonFly | biology/bcftools | 1.21 behind since 2026-07-11 | none known | - | [email protected] | - |
| HardenedBSD | biology/bcftools | 1.24 newest | no data | - | [email protected] | - |
| GhostBSD | biology/bcftools | 1.24 newest | no data | - | [email protected] | - |
Install
Binary package:
pkgin install bcftoolsFrom pkgsrc:
cd /usr/pkgsrc/biology/bcftools && make install cleanPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | Version |
|---|---|
| NetBSD 10.1 x86_64 | 1.21 |
| NetBSD 10.1 aarch64 | 1.21 |
| SmartOS / illumos x86_64 | 1.21 |
| macOS 15 arm64 | 1.21 |
Dependency graph
Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.