BSD Portswip/bio-mocha 1.20 NetBSD
Bcftools plugin for mosaic chromosomal alteration analysis
- System
- NetBSD
- Repository
- pkgsrc-wip
- Maintainer
- [email protected]
- License
- mit
- Categories
- wip, biology
Description
MoChA is a bcftools plugin released under the MIT license for mosaic chromosomal alteration detection and analysis from DNA microarray or whole genome sequence data. It can be used both with Illumina and Affymetrix data. It can also be used for detection of germline copy number variants. Data can be prepared in usable file formats using the gtc2vcf plugin.
In the other systems
The newest version among them is 1.22, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| NetBSD | wip/bio-mocha | 1.20 behind since 2026-08-31 | none known | - | [email protected] | - |
| FreeBSD | biology/bio-mocha by name | 1.22 newest | none known | - | [email protected] | 2026-10-08 |
| DragonFly | biology/bio-mocha by name | 1.20 behind since 2026-08-31 | none known | - | [email protected] | - |
| HardenedBSD | biology/bio-mocha by name | 1.22 newest | no data | - | [email protected] | - |
| GhostBSD | biology/bio-mocha by name | 1.22 newest | no data | - | [email protected] | - |
Install
From pkgsrc-wip (no binary package):
cd /usr/pkgsrc/wip/bio-mocha && make install cleanDependency graph
Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.
Dependencies
Run dependencies 9
No port depends on this one.