BSD Portsbiology/bio-mocha 1.20 NetBSD
Bcftools plugin for mosaic chromosomal alteration analysis
- System
- NetBSD
- Repository
- pkgsrc
- Maintainer
- [email protected]
- License
- mit
- Categories
- biology
- Package size
- 78.5 KiB, 257.4 KiB installed
Description
MoChA is a bcftools plugin released under the MIT license for mosaic chromosomal alteration detection and analysis from DNA microarray or whole genome sequence data. It can be used both with Illumina and Affymetrix data. It can also be used for detection of germline copy number variants. Data can be prepared in usable file formats using the gtc2vcf plugin.
In the other systems
The newest version among them is 1.22, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| NetBSD | biology/bio-mocha | 1.20 behind since 2026-08-31 | none known | - | [email protected] | - |
| FreeBSD | biology/bio-mocha | 1.22 newest | none known | - | [email protected] | 2026-10-08 |
| DragonFly | biology/bio-mocha | 1.20 behind since 2026-08-31 | none known | - | [email protected] | - |
| HardenedBSD | biology/bio-mocha | 1.22 newest | no data | - | [email protected] | - |
| GhostBSD | biology/bio-mocha | 1.22 newest | no data | - | [email protected] | - |
Install
Binary package:
pkgin install bio-mochaFrom pkgsrc:
cd /usr/pkgsrc/biology/bio-mocha && make install cleanPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | Version |
|---|---|
| NetBSD 10.1 x86_64 | 1.20 |
| NetBSD 10.1 aarch64 | 1.20 |
| SmartOS / illumos x86_64 | 1.20 |
| macOS 15 arm64 | 1.20 |
Dependency graph
Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.
Dependencies
Run dependencies 6
No port depends on this one.