BSD Ports

Vulnerable: version 1.21nb9 is affected by 11 known vulnerabilities. See below.

biology/htslib 1.21nb9 NetBSD

C library for high-throughput sequencing data formats

System
NetBSD
Repository
pkgsrc
Maintainer
[email protected]
License
mit
Categories
biology
Package size
924.7 KiB, 7204.9 KiB installed

Description

HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM, CRAM, VCF, and BCF, used for high-throughput sequencing data. It is the core library used by samtools and bcftools.

In the other systems

The newest version among them is 1.24, as upstream numbers it.

SystemPortVersionVulnerabilitiesStatusMaintainerLast update
NetBSDbiology/htslib1.21nb911 known-[email protected]-
FreeBSDbiology/htslib1.24_1 newestnone known-[email protected]2026-10-08
DragonFlybiology/htslib1.21none known-[email protected]-
HardenedBSDbiology/htslib1.24 newestno data-[email protected]-
GhostBSDbiology/htslib1.24 newestno data-[email protected]-

Compare across BSDs

Install

Binary package:

pkgin install htslib

From pkgsrc:

cd /usr/pkgsrc/biology/htslib && make install clean

Packages

The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.

RepositoryVersion
NetBSD 10.1 x86_641.21nb9
NetBSD 10.1 aarch641.21nb9
SmartOS / illumos x86_641.21nb9
macOS 15 arm641.21nb9

Dependencies

Run dependencies 2

Known vulnerabilities 11