BSD Portswip/kallisto 0.51.1nb1 NetBSD
Quantify abundances of transcripts from RNA-Seq data
- System
- NetBSD
- Repository
- pkgsrc-wip
- Maintainer
- [email protected]
- License
- 2-clause-bsd
- Categories
- wip, biology
Description
Kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment.
In the other systems
The newest version among them is 0.52.0, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| NetBSD | wip/kallisto | 0.51.1nb1 | none known | - | [email protected] | - |
| FreeBSD | biology/kallisto by name | 0.52.0,1 newest | none known | - | [email protected] | 2026-10-08 |
| DragonFly | biology/kallisto by name | 0.48.0_3,1 | none known | - | [email protected] | - |
| GhostBSD | biology/kallisto by name | 0.52.0,1 newest | no data | - | [email protected] | - |
Install
From pkgsrc-wip (no binary package):
cd /usr/pkgsrc/wip/kallisto && make install cleanDependency graph
Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.
Dependencies
Run dependencies 4
No port depends on this one.