BSD Portsbiology/kallisto 0.51.1 NetBSD
Quantify abundances of transcripts from RNA-Seq data
- System
- NetBSD
- Repository
- pkgsrc
- Maintainer
- [email protected]
- License
- 2-clause-bsd
- Categories
- biology
- Package size
- 1128.1 KiB, 2225.7 KiB installed
Description
Kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment.
In the other systems
The newest version among them is 0.52.0, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| NetBSD | biology/kallisto | 0.51.1 | none known | - | [email protected] | - |
| FreeBSD | biology/kallisto | 0.52.0,1 newest | none known | - | [email protected] | 2026-10-08 |
| DragonFly | biology/kallisto | 0.48.0_3,1 | none known | - | [email protected] | - |
| GhostBSD | biology/kallisto | 0.52.0,1 newest | no data | - | [email protected] | - |
Install
Binary package:
pkgin install kallistoFrom pkgsrc:
cd /usr/pkgsrc/biology/kallisto && make install cleanPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | Version |
|---|---|
| NetBSD 10.1 x86_64 | 0.51.1 |
| NetBSD 10.1 aarch64 | 0.51.1 |
| SmartOS / illumos x86_64 | - |
| macOS 15 arm64 | - |
Dependency graph
Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.