biology/rna-seq 1.3.0 NetBSD

Core tools needed for RNA-Seq analysis

System: NetBSD
Repository: pkgsrc
Maintainer: [email protected]
Categories: biology, meta-pkgs
Package size: 1.6 KiB, 0.0 KiB installed

Description

The rna-seq meta-package provides the core tools needed for performing a typical RNA-Seq differential gene expression analysis, including adapter trimming, quality control, alignment, and identification of differentially expressed genes. Researchers may want additional tools for data manipulation, gene ontology, etc.

In the other systems

The newest version among them is 1.3.0, as upstream numbers it.

System

Port

Version

Vulnerabilities

Status

Maintainer

Last update

NetBSD

biology/rna-seq

1.3.0 newest

none known

[email protected]

FreeBSD

biology/rna-seq

0.2.0

none known

[email protected]

2026-10-08

Compare across BSDs

Install

Binary package:

pkgin install rna-seq

From pkgsrc:

cd /usr/pkgsrc/biology/rna-seq && make install clean

Packages

The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.

Repository	Version
NetBSD 10.1 x86_64	1.3.0
NetBSD 10.1 aarch64	-
SmartOS / illumos x86_64	-
macOS 15 arm64	-

Dependency graph

Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.

graph LR
  me["biology/rna-seq"]
  me --> d0["archivers/lz4"]
  me --> d1["archivers/xz"]
  me --> d2["archivers/zstd"]
  me --> d3["biology/biolibc-tools"]
  me --> d4["biology/fasda"]
  me --> d5["biology/fastq-trim"]
  me --> d6["biology/fastqc"]
  me --> d7["biology/gffread"]
  me -.-> dmore(["9 more"])
  classDef this fill:#ab2b28,color:#ffffff,stroke:#ab2b28
  class me this

Dependencies

Run dependencies 17

No port depends on this one.