BSD Portsbiology/rna-star 2.7.10b NetBSD
Spliced Transcripts Alignment to a Reference
- System
- NetBSD
- Repository
- pkgsrc
- Maintainer
- [email protected]
- License
- gnu-gpl-v3
- Categories
- biology
- Package size
- 484.7 KiB, 1590.9 KiB installed
Description
STAR (Spliced Transcripts Alignment to a Reference) aims to achieve accurate alignment of high-throughput RNA-seq data. STAR is based on a previously undescribed RNA-seq alignment algorithm that uses sequential maximum mappable seed search in uncompressed suffix arrays followed by seed clustering and stitching procedure. STAR outperforms other aligners by a factor of >50 in mapping speed, aligning to the human genome 550 million 2 x 76 bp paired-end reads per hour on a modest 12-core server, while at the same time improving alignment sensitivity and precision
Install
Binary package:
pkgin install rna-starFrom pkgsrc:
cd /usr/pkgsrc/biology/rna-star && make install cleanPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | Version |
|---|---|
| NetBSD 10.1 x86_64 | 2.7.10b |
| NetBSD 10.1 aarch64 | - |
| SmartOS / illumos x86_64 | - |
| macOS 15 arm64 | - |
Dependency graph
Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.