BSD Ports

wip/rna-star 2.7.11b NetBSD

Spliced Transcripts Alignment to a Reference

System
NetBSD
Repository
pkgsrc-wip
Maintainer
[email protected]
License
gnu-gpl-v3
Categories
wip, biology

Description

STAR (Spliced Transcripts Alignment to a Reference) aims to achieve accurate alignment of high-throughput RNA-seq data. STAR is based on a previously undescribed RNA-seq alignment algorithm that uses sequential maximum mappable seed search in uncompressed suffix arrays followed by seed clustering and stitching procedure. STAR outperforms other aligners by a factor of >50 in mapping speed, aligning to the human genome 550 million 2 x 76 bp paired-end reads per hour on a modest 12-core server, while at the same time improving alignment sensitivity and precision

Install

From pkgsrc-wip (no binary package):

cd /usr/pkgsrc/wip/rna-star && make install clean

Dependency graph

Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.

Dependencies

Build dependencies 1
Run dependencies 3
Required by 1