BSD Portsbiology/gffread 0.12.7 NetBSD
GFF/GTF format conversions, filtering, FASTA extraction, etc
- System
- NetBSD
- Repository
- pkgsrc
- Maintainer
- [email protected]
- License
- mit
- Categories
- biology
- Package size
- 120.9 KiB, 303.6 KiB installed
Description
GFF/GTF utility providing format conversions, filtering, FASTA sequence extraction and more. The program gffread can be used to validate, filter, convert and perform various other operations on GFF files. Because the program shares the same GFF parser code with Cufflinks, Stringtie, and gffcompare, it could be used to verify that a GFF file from a certain annotation source is correctly "understood" by these programs.
In the other systems
The newest version among them is 0.12.9, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| NetBSD | biology/gffread | 0.12.7 | none known | - | [email protected] | - |
| FreeBSD | biology/gffread | 0.12.9 newest | none known | - | [email protected] | 2026-10-08 |
| DragonFly | biology/gffread | 0.12.7 | none known | - | [email protected] | - |
| HardenedBSD | biology/gffread | 0.12.9 newest | no data | - | [email protected] | - |
| GhostBSD | biology/gffread | 0.12.9 newest | no data | - | [email protected] | - |
Install
Binary package:
pkgin install gffreadFrom pkgsrc:
cd /usr/pkgsrc/biology/gffread && make install cleanPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | Version |
|---|---|
| NetBSD 10.1 x86_64 | 0.12.7 |
| NetBSD 10.1 aarch64 | 0.12.7 |
| SmartOS / illumos x86_64 | 0.12.7 |
| macOS 15 arm64 | 0.12.7 |