BSD Portswip/gffread 0.12.7 NetBSD
GFF/GTF format conversions, filtering, FASTA extraction, etc
- System
- NetBSD
- Repository
- pkgsrc-wip
- Maintainer
- [email protected]
- License
- mit
- Categories
- wip, biology
Description
GFF/GTF utility providing format conversions, filtering, FASTA sequence extraction and more. The program gffread can be used to validate, filter, convert and perform various other operations on GFF files. Because the program shares the same GFF parser code with Cufflinks, Stringtie, and gffcompare, it could be used to verify that a GFF file from a certain annotation source is correctly "understood" by these programs.
In the other systems
| System | Port | Version |
|---|---|---|
| NetBSD | wip/gffread | 0.12.7 |
| FreeBSD | biology/gffread | 0.12.9 |
| DragonFly | biology/gffread | 0.12.7 |
| HardenedBSD | biology/gffread | 0.12.9 |
| GhostBSD | biology/gffread | 0.12.9 |
Install
From pkgsrc-wip (no binary package):
cd /usr/pkgsrc/wip/gffread && make install cleanDependencies
No port depends on this one.