BSD Ports

wip/biostar-tools 1.10.1 NetBSD

Meta-package for Biostar Handbook tools

System
NetBSD
Repository
pkgsrc-wip
Maintainer
[email protected]
License
modified-bsd
Categories
wip, biology, meta-pkgs

Description

Biostar-Tools is a metaport for installing all the tools necessary to work through the Biostar Handbook, except for bedGrapToBigWig, which has license restrictions. If you need bedGraphToBigWig, run

cd /usr/pkgsrc/biology/ucsc-userapps && make install clean

The handbook instructs the user to install these tools mostly via bioconda, which then requires the user to activate the bioconda environment each time they want to use the tools. This meta-package installs all of the tools except emboss to the default PATH so they just work without any special environment. Emboss commands are installed to /usr/pkg/emboss/bin due to conflicts with other packages.

In the other systems

SystemPortVersion
NetBSDwip/biostar-tools1.10.1
FreeBSDbiology/biostar-tools2.1

Install

From pkgsrc-wip (no binary package):

cd /usr/pkgsrc/wip/biostar-tools && make install clean

Dependencies

Run dependencies 34

No port depends on this one.