BSD Portswip/bamtools 2.5.3 NetBSD
API and toolkit for handling BAM files
- System
- NetBSD
- Repository
- pkgsrc-wip
- Maintainer
- [email protected]
- License
- mit
- Categories
- wip, biology
Description
BamTools provides both a programmer's API and an end-user's toolkit for handling BAM files. BAM is the binary alternative to the sequence alignment/map (SAM) format used for storing genetic sequence data. It uses BGZF block compression implemented on top of the standard gzip file format to provide good compression while allowing efficient random access for indexed queries.
In the other systems
The newest version among them is 2.5.3, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| NetBSD | wip/bamtools | 2.5.3 newest | none known | - | [email protected] | - |
| FreeBSD | biology/bamtools by name | 2.5.3 newest | none known | - | [email protected] | 2026-10-08 |
| DragonFly | biology/bamtools by name | 2.5.2_2 | none known | - | [email protected] | - |
| HardenedBSD | biology/bamtools by name | 2.5.3 newest | no data | - | [email protected] | - |
| GhostBSD | biology/bamtools by name | 2.5.3 newest | no data | - | [email protected] | - |
Install
From pkgsrc-wip (no binary package):
cd /usr/pkgsrc/wip/bamtools && make install cleanDependency graph
Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.