BSD Portsbiology/trimmomatic 0.38 NetBSD
Flexible read trimming tool for Illumina NGS data
- System
- NetBSD
- Repository
- pkgsrc
- Maintainer
- [email protected]
- License
- gnu-gpl-v3
- Categories
- biology
- Package size
- 117.9 KiB, 126.0 KiB installed
Description
Trimmomatic performs a variety of useful trimming tasks for illumina paired-end and single ended data. The selection of trimming steps and their associated parameters are supplied on the command line. It works with FASTQ (using phred + 33 or phred + 64 quality scores, depending on the Illumina pipeline used), either uncompressed or gzipp'ed FASTQ.
In the other systems
The newest version among them is 0.39, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| NetBSD | biology/trimmomatic | 0.38 | none known | - | [email protected] | - |
| FreeBSD | biology/trimmomatic | 0.39_2 newest | none known | - | [email protected] | - |
| DragonFly | biology/trimmomatic | 0.39 newest | none known | - | [email protected] | - |
| HardenedBSD | biology/trimmomatic | 0.39_2 newest | no data | - | [email protected] | - |
| GhostBSD | biology/trimmomatic | 0.39_2 newest | no data | - | [email protected] | - |
Install
Binary package:
pkgin install TrimmomaticFrom pkgsrc:
cd /usr/pkgsrc/biology/trimmomatic && make install cleanPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | Version |
|---|---|
| NetBSD 10.1 x86_64 | 0.38 |
| NetBSD 10.1 aarch64 | 0.38 |
| SmartOS / illumos x86_64 | 0.38 |
| macOS 15 arm64 | 0.38 |
Dependency graph
Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.