biology/trimmomatic 0.39 DragonFly

Flexible read trimming tool for Illumina NGS data

System: DragonFly
Repository: DPorts
Maintainer: [email protected] (as in FreeBSD)
License: GPLv3
Categories: biology, java
Package size: 129.1 KiB, 161.5 KiB installed

Description

Trimmomatic performs a variety of useful trimming tasks for illumina NGS paired-end and single ended data.

In the other systems

The newest version among them is 0.39, as upstream numbers it.

System

Port

Version

Vulnerabilities

Status

Maintainer

Last update

DragonFly

biology/trimmomatic

0.39 newest

none known

[email protected]

FreeBSD

biology/trimmomatic

0.39_2 newest

none known

[email protected]

NetBSD

biology/trimmomatic

0.38

none known

[email protected]

HardenedBSD

biology/trimmomatic

0.39_2 newest

no data

[email protected]

GhostBSD

biology/trimmomatic

0.39_2 newest

no data

[email protected]

Compare across BSDs

Install

Binary package:

pkg install trimmomatic

From DPorts:

cd /usr/dports/biology/trimmomatic && make install clean

Dependency graph

Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.

graph LR
  me["biology/trimmomatic"]
  me --> d0["java/openjdk8"]
  classDef this fill:#ab2b28,color:#ffffff,stroke:#ab2b28
  class me this

Dependencies

Run dependencies 1

java/openjdk8

No port depends on this one.

Configuration

No options to configure.

Service scripts: none

Message after installing

===>   NOTICE:

The trimmomatic port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://docs.freebsd.org/en/articles/contributing/#ports-contributing