BSD Portswip/fastq-trim 0.1.4 NetBSD
Lightening fast sequence read trimmer
- System
- NetBSD
- Repository
- pkgsrc-wip
- Maintainer
- [email protected]
- License
- 2-clause-bsd
- Categories
- wip, biology
Description
Fastq-trim is a lightening fast read trimming tool for QA of DNA and RNA reads prior to analyses such as RNA-Seq. it runs in a fraction of the time required by popular trimmers and uses only a few megabytes of RAM, so it will run almost entirely in cache. The design supports adding any number of alignment functions, so it can be easily adapted to any trimming needs.
In the other systems
The newest version among them is 0.1.4, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| NetBSD | wip/fastq-trim | 0.1.4 newest | none known | - | [email protected] | - |
| FreeBSD | biology/fastq-trim by name | 0.1.4 newest | none known | - | [email protected] | - |
| HardenedBSD | biology/fastq-trim by name | 0.1.4 newest | no data | - | [email protected] | - |
| GhostBSD | biology/fastq-trim by name | 0.1.4 newest | no data | - | [email protected] | - |
Install
From pkgsrc-wip (no binary package):
cd /usr/pkgsrc/wip/fastq-trim && make install cleanDependency graph
Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.