BSD Portsbiology/fastq-trim 0.1.3 NetBSD
Lightening fast sequence read trimmer
- System
- NetBSD
- Repository
- pkgsrc
- Maintainer
- [email protected]
- License
- 2-clause-bsd
- Categories
- biology
- Package size
- 21.4 KiB, 133.5 KiB installed
Description
Fastq-trim is a lightening fast read trimming tool for QA of DNA and RNA reads prior to analyses such as RNA-Seq. it runs in a fraction of the time required by popular trimmers and uses only a few megabytes of RAM, so it will run almost entirely in cache. The design supports adding any number of alignment functions, so it can be easily adapted to any trimming needs.
In the other systems
The newest version among them is 0.1.4, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| NetBSD | biology/fastq-trim | 0.1.3 | none known | - | [email protected] | - |
| FreeBSD | biology/fastq-trim | 0.1.4 newest | none known | - | [email protected] | - |
| HardenedBSD | biology/fastq-trim | 0.1.4 newest | no data | - | [email protected] | - |
| GhostBSD | biology/fastq-trim | 0.1.4 newest | no data | - | [email protected] | - |
Install
Binary package:
pkgin install fastq-trimFrom pkgsrc:
cd /usr/pkgsrc/biology/fastq-trim && make install cleanPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | Version |
|---|---|
| NetBSD 10.1 x86_64 | 0.1.3 |
| NetBSD 10.1 aarch64 | 0.1.3 |
| SmartOS / illumos x86_64 | 0.1.3 |
| macOS 15 arm64 | 0.1.3 |
Dependency graph
Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.