BSD Portsbiology/chip-seq 1.2 NetBSD
Core tools needed for ChIP-Seq analysis
- System
- NetBSD
- Repository
- pkgsrc
- Maintainer
- [email protected]
- Categories
- biology, meta-pkgs
- Package size
- 1.6 KiB, 0.0 KiB installed
Description
The chip-seq meta-package provides the core tools needed for performing a typical ChIP-Seq differential accessibility analysis, including adapter trimming, quality control, alignment, peak calling, and identification of differentially accessible peaks. Researchers may want additional tools for data manipulation, gene ontology, etc.
In the other systems
| System | Port | Version |
|---|---|---|
| NetBSD | biology/chip-seq | 1.2 |
| FreeBSD | biology/chip-seq | 0.3.1 |
| HardenedBSD | biology/chip-seq | 0.3.1 |
Install
Binary package:
pkgin install chip-seqFrom pkgsrc:
cd /usr/pkgsrc/biology/chip-seq && make install cleanPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | Version |
|---|---|
| NetBSD 10.1 x86_64 | 1.2 |
| NetBSD 10.1 aarch64 | - |
| SmartOS / illumos x86_64 | - |
| macOS 15 arm64 | - |
Dependencies
Run dependencies 19
No port depends on this one.