BSD Portsbiology/py-macs2 2.2.9.1nb3 NetBSD
Algorithm for identifying transcription factor binding sites
- System
- NetBSD
- Repository
- pkgsrc
- Maintainer
- [email protected]
- Last update
- Commit
65c9b1c391- License
- modified-bsd
- Categories
- biology
- Package size
- 1232.8 KiB, 5026.4 KiB installed
Description
MACS is a tool for chromatin immunoprecipitation (ChIP) sequence analysis. MACS empirically models the length of the sequenced ChIP fragments, which tend to be shorter than sonication or library construction size estimates, and uses it to improve the spatial resolution of predicted binding sites.
In the other systems
The newest version among them is 2.2.9.1, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| NetBSD | biology/py-macs2 | 2.2.9.1nb3 newest | none known | - | [email protected] | 2026-10-16 |
| DragonFly | biology/py-macs2 | 2.2.9.1_1 newest | none known | - | [email protected] | - |
Install
Binary package:
pkgin install py312-macs2From pkgsrc:
cd /usr/pkgsrc/biology/py-macs2 && make install cleanPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | Version |
|---|---|
| NetBSD 10.1 x86_64 | 2.2.9.1nb3 |
| NetBSD 10.1 aarch64 | 2.2.9.1nb3 |
| SmartOS / illumos x86_64 | 2.2.9.1nb3 |
| macOS 15 arm64 | 2.2.9.1nb3 |
Dependency graph
Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.
Dependencies
Run dependencies 2
Required by 2
Configuration
No options to configure.
- Service scripts
- none
- Flavors
py313-macs2-2.2.9.1nb3,py314-macs2-2.2.9.1nb3