BSD Portsbiology/py-macs3 3.0.2nb2 NetBSD
Peak caller aimed at transcription factor binding sites
- System
- NetBSD
- Repository
- pkgsrc
- Maintainer
- [email protected]
- Last update
- Commit
65c9b1c391- License
- modified-bsd
- Categories
- biology
- Package size
- 1788.9 KiB, 7459.7 KiB installed
Description
MACS (Model-based Analysis of ChIP-Seq) is a tool for identifying transcription factor (TF) binding sites. Such sites are generated by CHiP-Seq (CHromatin immuno-Precipitation sequencing) and ATAC-Seq (Assay for Transposase Accessible Chromatin Sequencing). MACS identifies "peaks" in the genome sequence, which are areas enriched in bound TFs or accessible chromatin.
In the other systems
The newest version among them is 3.0.5, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| NetBSD | biology/py-macs3 | 3.0.2nb2 behind since 2026-09-26 | none known | - | [email protected] | 2026-10-16 |
| FreeBSD | biology/py-macs3 | 3.0.5 newest | none known | - | [email protected] | 2026-10-08 |
| DragonFly | biology/py-macs3 | 3.0.3 behind since 2026-09-26 | none known | - | [email protected] | - |
| HardenedBSD | biology/py-macs3 | 3.0.5 newest | no data | - | [email protected] | - |
| GhostBSD | biology/py-macs3 | 3.0.4_1 behind since 2026-09-26 | no data | - | [email protected] | - |
Install
Binary package:
pkgin install py312-macs3From pkgsrc:
cd /usr/pkgsrc/biology/py-macs3 && make install cleanPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | Version |
|---|---|
| NetBSD 10.1 x86_64 | 3.0.2nb2 |
| NetBSD 10.1 aarch64 | 3.0.2nb2 |
| SmartOS / illumos x86_64 | - |
| macOS 15 arm64 | 3.0.2nb2 |
Dependency graph
Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.
Dependencies
Run dependencies 7
Required by 1
Configuration
No options to configure.
- Service scripts
- none
- Flavors
py313-macs3-3.0.2nb2,py314-macs3-3.0.2nb2