BSD Ports

biology/hisat2 2.2.1nb4 NetBSD

Alignment program for mapping next-generation sequencing reads

System
NetBSD
Repository
pkgsrc
Maintainer
[email protected]
Last update
Commit
e282cfb26b
License
gnu-gpl-v3
Categories
biology
Package size
1086.9 KiB, 4750.4 KiB installed

Description

HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes (as well as to a single reference genome).

In the other systems

The newest version among them is 2.2.3, as upstream numbers it.

SystemPortVersionVulnerabilitiesStatusMaintainerLast update
NetBSDbiology/hisat22.2.1nb4 behind since 2026-08-31none known-[email protected]2026-08-04
FreeBSDbiology/hisat22.2.3 newestnone known-[email protected]2026-10-08
DragonFlybiology/hisat22.2.1_2 behind since 2026-08-31none known-[email protected]-
HardenedBSDbiology/hisat22.2.3 newestno data-[email protected]-
GhostBSDbiology/hisat22.2.3 newestno data-[email protected]-

Compare across BSDs

Install

Binary package:

pkgin install hisat2

From pkgsrc:

cd /usr/pkgsrc/biology/hisat2 && make install clean

Packages

The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.

RepositoryVersion
NetBSD 10.1 x86_642.2.1nb4
NetBSD 10.1 aarch64-
SmartOS / illumos x86_64-
macOS 15 arm642.2.1nb4

Dependency graph

Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.

Dependencies

Run dependencies 1

Related ports

The same software or family in NetBSD: one homepage, or one name but for a version or a variant.

Commit history 1

DateCommitCreditsLog message
e282cfb26b wiz *: add LDFLAGS overide that was previously in mk
This is a workaround and should be fixed properly per-package - they should use the pkgsrc LDFLAGS, but this restores what happened before the mk/ cleanup. Fixes relro build for packages that do not honor LDFLAGS. Package list provided by mef@, thanks! Workaround commit requested by bsiegert on tech-pkg.