BSD Portswip/sra-tools 3.2.1nb1 NetBSD
NCBI's toolkit for handling data in INSDC Sequence Read Archives
- System
- NetBSD
- Repository
- pkgsrc-wip
- Maintainer
- [email protected]
- License
- public-domain AND gnu-lgpl-v2.1
- Categories
- wip, biology
Description
The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC (International Nucleotide Sequence Database Collaboration) SRA (Sequence Read Archives). The SRA house sequence reads and alignments generated by DNA/RNA sequencers. The SRA Toolkit facilitates downloading sequence data, performing filtering and conversions on-the-fly, thus saving enormous amounts of time, bandwidth, and storage.
In the other systems
| System | Port | Version |
|---|---|---|
| NetBSD | wip/sra-tools | 3.2.1nb1 |
| FreeBSD | biology/sra-tools | 3.4.1_3 |
| DragonFly | biology/sra-tools | 2.11.0_4 |
| HardenedBSD | biology/sra-tools | 3.4.1_3 |
| GhostBSD | biology/sra-tools | 3.4.1_3 |
Install
From pkgsrc-wip (no binary package):
cd /usr/pkgsrc/wip/sra-tools && make install clean