BSD Ports

wip/peak-classifier 0.1.4.21 NetBSD

Classify ChIP/ATAC-Seq peaks based on features provided in a GFF

System
NetBSD
Repository
pkgsrc-wip
Maintainer
[email protected]
License
2-clause-bsd
Categories
wip, biology

Description

Classify ChIP/ATAC-Seq peaks based on features provided in a GFF Peaks are provided in a BED file sorted by chromosome and position. The GFF must be sorted by chromosome and position, with gene-level features separated by ### tags and each gene organized into subfeatures such as transcripts and exons. This is the default for common data sources.

In the other systems

SystemPortVersion
NetBSDwip/peak-classifier0.1.4.21
FreeBSDbiology/peak-classifier0.1.4.13_2
DragonFlybiology/peak-classifier0.1.4.13_1
HardenedBSDbiology/peak-classifier0.1.4.13_2
GhostBSDbiology/peak-classifier0.1.4.13_2

Install

From pkgsrc-wip (no binary package):

cd /usr/pkgsrc/wip/peak-classifier && make install clean

Dependencies

Run dependencies 2
Required by 2