BSD Portsbiology/star 2.7.9.a DragonFly
Spliced Transcripts Alignment to a Reference
- System
- DragonFly
- Repository
- DPorts
- Maintainer
- [email protected] (as in FreeBSD)
- License
- GPLv3
- Categories
- biology
- Package size
- 450.3 KiB, 1455.5 KiB installed
Description
STAR (Spliced Transcripts Alignment to a Reference) aims to achieve accurate alignment of high-throughput RNA-seq data.
STAR is based on a previously undescribed RNA-seq alignment algorithm that uses sequential maximum mappable seed search in uncompressed suffix arrays followed by seed clustering and stitching procedure. STAR outperforms other aligners by a factor of >50 in mapping speed, aligning to the human genome 550 million 2 x 76 bp paired-end reads per hour on a modest 12-core server, while at the same time improving alignment sensitivity and precision
WWW: https://github.com/alexdobin/STAR
In the other systems
The newest version among them is 2.7.11.a, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| DragonFly | biology/star | 2.7.9.a | none known | - | [email protected] | - |
| FreeBSD | biology/star | 2.7.11.a_1 newest | none known | - | [email protected] | 2026-10-08 |
| HardenedBSD | biology/star | 2.7.11.a_1 newest | no data | - | [email protected] | - |
| GhostBSD | biology/star | 2.7.11.a_1 newest | no data | - | [email protected] | - |
Install
Binary package:
pkg install rna-STARFrom DPorts:
cd /usr/dports/biology/star && make install cleanDependency graph
Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.
Dependencies
Run dependencies 1
No port depends on this one.