BSD Ports

biology/stringtie 2.1.1 DragonFly

Transcript assembly and quantification for RNA-seq

System
DragonFly
Repository
DPorts
Maintainer
[email protected] (as in FreeBSD)
License
MIT
Categories
biology
Package size
274.9 KiB, 678.7 KiB installed

Description

StringTie is a fast and highly efficient assembler of RNA-seq alignments into potential transcripts. The input can be the alignments of raw reads as usual; it also accepts longer assembled sequences. The output can be processed by downstream software including Ballgown, Cuffdiff, etc.

Citation: Pertea et al. (2015) StringTie enables improved reconstruction of a transcriptome from RNA-seq reads. Nature Biotechnology 33: 290-295 doi:10.1038/nbt.3122

In the other systems

SystemPortVersion
DragonFlybiology/stringtie2.1.1
FreeBSDbiology/stringtie2.1.1
NetBSDbiology/stringtie2.1.1

Install

Binary package:

pkg install stringtie

From DPorts:

cd /usr/dports/biology/stringtie && make install clean

Dependencies

Required by 1