BSD Portsbiology/stringtie 2.1.1 NetBSD
Transcript assembly and quantification for RNA-seq
- System
- NetBSD
- Repository
- pkgsrc
- Maintainer
- [email protected]
- License
- mit
- Categories
- biology
- Package size
- 278.5 KiB, 693.6 KiB installed
Description
StringTie is a fast and highly efficient assembler of RNA-seq alignments into potential transcripts. The input can be the alignments of raw reads as usual; it also accepts longer assembled sequences. The output can be processed by downstream software including Ballgown, Cuffdiff, etc.
In the other systems
| System | Port | Version |
|---|---|---|
| NetBSD | biology/stringtie | 2.1.1 |
| FreeBSD | biology/stringtie | 2.1.1 |
| DragonFly | biology/stringtie | 2.1.1 |
| HardenedBSD | biology/stringtie | 2.1.1 |
| GhostBSD | biology/stringtie | 2.1.1 |
Install
Binary package:
pkgin install stringtieFrom pkgsrc:
cd /usr/pkgsrc/biology/stringtie && make install cleanPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | Version |
|---|---|
| NetBSD 10.1 x86_64 | 2.1.1 |
| NetBSD 10.1 aarch64 | 2.1.1 |
| SmartOS / illumos x86_64 | 2.1.1 |
| macOS 15 arm64 | 2.1.1 |