BSD Portswip/stringtie 2.1.1 NetBSD
Transcript assembly and quantification for RNA-seq
- System
- NetBSD
- Repository
- pkgsrc-wip
- Maintainer
- [email protected]
- License
- mit
- Categories
- wip, biology
Description
StringTie is a fast and highly efficient assembler of RNA-seq alignments into potential transcripts. The input can be the alignments of raw reads as usual; it also accepts longer assembled sequences. The output can be processed by downstream software including Ballgown, Cuffdiff, etc.
In the other systems
| System | Port | Version |
|---|---|---|
| NetBSD | wip/stringtie | 2.1.1 |
| FreeBSD | biology/stringtie | 2.1.1 |
| DragonFly | biology/stringtie | 2.1.1 |
| HardenedBSD | biology/stringtie | 2.1.1 |
| GhostBSD | biology/stringtie | 2.1.1 |
Install
From pkgsrc-wip (no binary package):
cd /usr/pkgsrc/wip/stringtie && make install clean