BSD Portsbiology/unikmer 0.20.0_4 DragonFly
Toolkit for nucleic acid k-mer analysis, set operations on k-mers
- System
- DragonFly
- Repository
- DPorts
- Maintainer
- [email protected] (as in FreeBSD)
- License
- MIT
- Categories
- biology
- Package size
- 2700.9 KiB, 8353.4 KiB installed
Description
unikmer is a golang package and a toolkit for nucleic acid k-mer analysis, providing functions including set operation k-mers (sketch) optional with TaxIds but without count information.
K-mers are either encoded (k<=32) or hashed (arbitrary k) into uint64, and serialized in binary file with extension .unik.
TaxIds can be assigned when counting k-mers from genome sequences, and LCA (Lowest Common Ancestor) is computed during set opertions including computing union, intersecton, set difference, unique and repeated k-mers.
In the other systems
The newest version among them is 0.20.0, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| DragonFly | biology/unikmer | 0.20.0_4 newest | none known | - | [email protected] | - |
| FreeBSD | biology/unikmer | 0.20.0_27 newest | none known | - | [email protected] | 2026-10-20 |
| HardenedBSD | biology/unikmer | 0.20.0_25 newest | no data | - | [email protected] | - |
| GhostBSD | biology/unikmer | 0.20.0_25 newest | no data | - | [email protected] | - |
Install
Binary package:
pkg install unikmerFrom DPorts:
cd /usr/dports/biology/unikmer && make install cleanDependencies
No port depends on this one.