BSD Portsbiology/unikmer 0.20.0_27 FreeBSD
Toolkit for nucleic acid k-mer analysis, set operations on k-mers
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- Last update
- Commit
d81b7ba3c3- License
- MIT
- Categories
- biology
- Package size
- 3011.8 KiB, 9262.8 KiB installed
Description
unikmer is a golang package and a toolkit for nucleic acid k-mer analysis, providing functions including set operation k-mers (sketch) optional with TaxIds but without count information.
K-mers are either encoded (k<=32) or hashed (arbitrary k) into uint64, and serialized in binary file with extension .unik.
TaxIds can be assigned when counting k-mers from genome sequences, and LCA (Lowest Common Ancestor) is computed during set opertions including computing union, intersecton, set difference, unique and repeated k-mers.
In the other systems
The newest version among them is 0.20.0, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| FreeBSD | biology/unikmer | 0.20.0_27 newest | none known | - | [email protected] | 2026-10-20 |
| DragonFly | biology/unikmer | 0.20.0_4 newest | none known | - | [email protected] | - |
| HardenedBSD | biology/unikmer | 0.20.0_25 newest | no data | - | [email protected] | - |
| GhostBSD | biology/unikmer | 0.20.0_25 newest | no data | - | [email protected] | - |
Install
Binary package:
pkg install unikmerFrom the ports tree:
cd /usr/ports/biology/unikmer/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= unikmer>0:biology/unikmerPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 0.20.0_26 | 0.20.0_27 | - | 0.20.0_9 | 0.20.0_27 |
| FreeBSD:14:quarterly | 0.20.0_26 | 0.20.0_27 | n/a | 0.20.0_7 | 0.20.0_27 |
| FreeBSD:15:latest | 0.20.0_26 | 0.20.0_27 | n/a | - | 0.20.0_9 |
| FreeBSD:15:quarterly | 0.20.0_26 | 0.20.0_27 | n/a | n/a | n/a |
| FreeBSD:16:latest | 0.20.0_26 | 0.20.0_27 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependency graph
Ports that need it on the left, what it needs to run on the right (to build, as it needs nothing to run); at most 8 of each. "Dependencies" below lists them all.
Dependencies
As this port's Makefile names them.
Test 1
csvtk: science/csvtk
The full lists below include those, and their dependencies in turn.
Build dependencies 1
No port depends on this one.
Configuration
No options to configure.
- USES
- go:modules perl5
- Service scripts
- none
Files
distinfo 3
| File | Size | SHA256 |
|---|---|---|
| go/biology_unikmer/unikmer-v0.20.0/v0.20.0.mod | 1455 | c0a619c514e9cf08be0a50dc494e8e890446a40d4b82043a2624b215ecc6b65e |
| go/biology_unikmer/unikmer-v0.20.0/v0.20.0.zip | 4.288447e+06 | 2e4625ea253e3b571ccfd30fb9d825bee13a3d49e1b665a9a5d3e2a647a60e9c |
| go/biology_unikmer/unikmer-v0.20.0/golang-sys-v0.21.0_GH0.tar.gz | 1.495683e+06 | 06e5676d2c61345151e302c7138dd1282ce8ea3c5a6a5a03b7cb66a16c66dc22 |
Commit history 6
The latest 5 of 6 in the history this site was built from.