biology/bioperl 1.7.7nb7 NetBSD
Perl tools for computational molecular biology
- System
- NetBSD
- Repository
- pkgsrc
- Maintainer
- [email protected]
- Last update
- Commit
618415630a- License
- gnu-gpl-v2 OR artistic
- Categories
- biology, perl5
- Package size
- 1352.2 KiB, 11060.9 KiB installed
Description
The Bioperl Project is an international association of developers of open source Perl tools for bioinformatics, genomics and life science research.
Bioperl is a collection of object-oriented Perl modules created by the Bioperl Project. It forms the basis of a large number of bioinformatics and genomics applications.
In the other systems
The newest version among them is 1.7.8, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| NetBSD | biology/bioperl | 1.7.7nb7 | none known | - | [email protected] | 2026-07-16 |
| OpenBSD | biology/bioperl | 1.7.8 newest | no data | - | The OpenBSD ports mailing-list <[email protected]> | - |
Install
Binary package:
pkgin install bioperl
From pkgsrc:
cd /usr/pkgsrc/biology/bioperl && make install clean
Packages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | Version |
|---|---|
| NetBSD 10.1 x86_64 | 1.7.7nb7 |
| NetBSD 10.1 aarch64 | 1.7.7nb7 |
| SmartOS / illumos x86_64 | 1.7.7nb7 |
| macOS 15 arm64 | 1.7.7nb7 |
Dependency graph
Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.
Dependencies
Run dependencies 32
- biology/p5-Bio-ASN1-EntrezGene
- devel/p5-Array-Compare
- devel/p5-Clone
- devel/p5-Convert-Binary-C
- devel/p5-Data-Stag
- devel/p5-Error
- devel/p5-Graph
- devel/p5-IO-String
- devel/p5-List-MoreUtils
- devel/p5-Set-Scalar
- devel/p5-Sort-Naturally
- graphics/p5-GD
- graphics/p5-GraphViz
- graphics/p5-SVG
- graphics/p5-SVG-Graph
- lang/perl5
- math/p5-Algorithm-Munkres
- math/p5-Spreadsheet-ParseExcel
- net/p5-SOAP-Lite
- print/p5-PostScript
- textproc/p5-XML-DOM
- textproc/p5-XML-Parser
- textproc/p5-XML-SAX
- textproc/p5-XML-SAX-Writer
- textproc/p5-XML-Simple
- textproc/p5-XML-Twig
- textproc/p5-XML-Writer
- textproc/p5-YAML
- textproc/p5-libxml
- www/p5-HTML-Parser
- www/p5-HTML-TableExtract
- www/p5-libwww