biology/vcf-split 0.1.5.19 NetBSD
Split a multi-sample VCF into single-sample VCFs
- System
- NetBSD
- Repository
- pkgsrc
- Maintainer
- [email protected]
- License
- 2-clause-bsd
- Categories
- biology
- Package size
- 10.7 KiB, 24.2 KiB installed
Description
Vcf-split splits a multi-sample VCF into single-sample VCFs, writing thousands of output files simultaneously. Parsing the TOPMed human chromosome 1 BCF with bcftools takes two days, so extracting the 137,977 samples one at a time or using thousands of parallel readers of the same file is impractical. Vcf-split solves this by generating thousands of single-sample outputs during a single sweep through the multi-sample input.
In the other systems
| System | Port | Version |
|---|---|---|
| NetBSD | biology/vcf-split | 0.1.5.19 |
| FreeBSD | biology/vcf-split | 0.1.5.10_1 |
| DragonFly | biology/vcf-split | 0.1.5.10_1 |
| HardenedBSD | biology/vcf-split | 0.1.5.10_1 |
| GhostBSD | biology/vcf-split | 0.1.5.10_1 |
Install
Binary package:
pkgin install vcf-split
From pkgsrc:
cd /usr/pkgsrc/biology/vcf-split && make install clean
Packages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | Version |
|---|---|
| NetBSD 10.1 x86_64 | 0.1.5.19 |
| NetBSD 10.1 aarch64 | 0.1.5.19 |
| SmartOS / illumos x86_64 | 0.1.5.19 |
| macOS 15 arm64 | 0.1.5.19 |
Dependencies
Run dependencies 1
No port depends on this one.