wip/vcf-split 0.1.5.19 NetBSD
Split a multi-sample VCF into single-sample VCFs
- System
- NetBSD
- Repository
- pkgsrc-wip
- Maintainer
- [email protected]
- License
- 2-clause-bsd
- Categories
- wip, biology
Description
Vcf-split splits a multi-sample VCF into single-sample VCFs, writing thousands of output files simultaneously. Parsing the TOPMed human chromosome 1 BCF with bcftools takes two days, so extracting the 137,977 samples one at a time or using thousands of parallel readers of the same file is impractical. Vcf-split solves this by generating thousands of single-sample outputs during a single sweep through the multi-sample input.
In the other systems
| System | Port | Version |
|---|---|---|
| NetBSD | wip/vcf-split | 0.1.5.19 |
| FreeBSD | biology/vcf-split | 0.1.5.10_1 |
| DragonFly | biology/vcf-split | 0.1.5.10_1 |
| HardenedBSD | biology/vcf-split | 0.1.5.10_1 |
| GhostBSD | biology/vcf-split | 0.1.5.10_1 |
Install
From pkgsrc-wip (no binary package):
cd /usr/pkgsrc/wip/vcf-split && make install clean
Dependencies
Run dependencies 1
No port depends on this one.