BSD Portsbiology/vsearch 2.29.4 NetBSD
Versatile open-source tool for metagenomics
- System
- NetBSD
- Repository
- pkgsrc
- Maintainer
- [email protected]
- License
- gnu-gpl-v3
- Categories
- biology
- Package size
- 216.5 KiB, 659.8 KiB installed
Description
VSEARCH supports de novo and reference based chimera detection, clustering, full-length and prefix dereplication, rereplication, reverse complementation, masking, all-vs-all pairwise global alignment, exact and global alignment searching, shuffling, subsampling and sorting. It also supports FASTQ file analysis, filtering, conversion and merging of paired-end reads.
The aim of this project is to create an alternative to the USEARCH tool developed by Robert C. Edgar (2010).
In the other systems
The newest version among them is 2.32.0, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| NetBSD | biology/vsearch | 2.29.4 behind since 2026-09-20 | none known | - | [email protected] | - |
| FreeBSD | biology/vsearch | 2.32.0 newest | none known | - | [email protected] | 2026-10-08 |
| HardenedBSD | biology/vsearch | 2.32.0 newest | no data | - | [email protected] | - |
| GhostBSD | biology/vsearch | 2.32.0 newest | no data | - | [email protected] | - |
Install
Binary package:
pkgin install vsearchFrom pkgsrc:
cd /usr/pkgsrc/biology/vsearch && make install cleanPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | Version |
|---|---|
| NetBSD 10.1 x86_64 | 2.29.4 |
| NetBSD 10.1 aarch64 | 2.29.4 |
| SmartOS / illumos x86_64 | - |
| macOS 15 arm64 | 2.29.4 |
Dependencies
No port depends on this one.