BSD Portswip/vsearch 2.30.0 NetBSD
Versatile open-source tool for metagenomics
- System
- NetBSD
- Repository
- pkgsrc-wip
- Maintainer
- [email protected]
- License
- gnu-gpl-v3
- Categories
- wip, biology
Description
VSEARCH supports de novo and reference based chimera detection, clustering, full-length and prefix dereplication, rereplication, reverse complementation, masking, all-vs-all pairwise global alignment, exact and global alignment searching, shuffling, subsampling and sorting. It also supports FASTQ file analysis, filtering, conversion and merging of paired-end reads.
The aim of this project is to create an alternative to the USEARCH tool developed by Robert C. Edgar (2010).
In the other systems
| System | Port | Version |
|---|---|---|
| NetBSD | wip/vsearch | 2.30.0 |
| FreeBSD | biology/vsearch | 2.32.0 |
| HardenedBSD | biology/vsearch | 2.32.0 |
| GhostBSD | biology/vsearch | 2.32.0 |
Install
From pkgsrc-wip (no binary package):
cd /usr/pkgsrc/wip/vsearch && make install clean