BSD Ports

wip/salmon 0.11.3 NetBSD

Transcript-level quantification of RNA-seq from lightweight alignments

System
NetBSD
Repository
pkgsrc-wip
Maintainer
[email protected]
License
gnu-gpl-v3
Categories
wip, biology

Description

Salmon is a wicked-fast program to produce a highly-accurate, transcript-level quantification estimates from RNA-seq data. Salmon achieves is accuracy and speed via a number of different innovations, including the use of quasi-mapping (accurate but fast-to-compute proxies for traditional read alignments), and massively-parallel stochastic collapsed variational inference. The result is a versatile tool that fits nicely into many differnt pipelines.

In the other systems

SystemPortVersion
NetBSDwip/salmon0.11.3
FreeBSDbiology/salmon1.10.3_2
HardenedBSDbiology/salmon1.10.3_2
GhostBSDbiology/salmon1.10.3_2

Install

From pkgsrc-wip (no binary package):

cd /usr/pkgsrc/wip/salmon && make install clean

Dependencies

Run dependencies 5
Required by 1