wip/salmon 0.11.3 NetBSD
Transcript-level quantification of RNA-seq from lightweight alignments
- System
- NetBSD
- Repository
- pkgsrc-wip
- Maintainer
- [email protected]
- License
- gnu-gpl-v3
- Categories
- wip, biology
Description
Salmon is a wicked-fast program to produce a highly-accurate, transcript-level quantification estimates from RNA-seq data. Salmon achieves is accuracy and speed via a number of different innovations, including the use of quasi-mapping (accurate but fast-to-compute proxies for traditional read alignments), and massively-parallel stochastic collapsed variational inference. The result is a versatile tool that fits nicely into many differnt pipelines.
In the other systems
| System | Port | Version |
|---|---|---|
| NetBSD | wip/salmon | 0.11.3 |
| FreeBSD | biology/salmon | 1.10.3_2 |
| HardenedBSD | biology/salmon | 1.10.3_2 |
| GhostBSD | biology/salmon | 1.10.3_2 |
Install
From pkgsrc-wip (no binary package):
cd /usr/pkgsrc/wip/salmon && make install clean